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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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14
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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234 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ACSS1
ENSSSCG00000007133
ENSG00000154930
Acyl-CoA synthetase short chain family member 1
Low tissue specificity
Detected in many
ADAM8
ENSSSCG00000010772
ENSG00000151651
ADAM metallopeptidase domain 8
Tissue enhanced
Detected in many
ovary:
19.1
ADAP2
ENSSSCG00000017738
ENSG00000184060
Arf-GAP with dual PH domain-containing protein 2
Low tissue specificity
Detected in all
ADCY7
ENSSSCG00000039408
ENSG00000121281
Adenylate cyclase 7
Tissue enhanced
Detected in many
lymphoid tissue:
48.3
ADGRE1
ENSSSCG00000013556
ENSG00000174837
Adhesion G protein-coupled receptor E1
Group enriched
Detected in some
adipose tissue:
17.7
liver:
9.3
lung:
32.7
synovial tissue:
23.0
ADGRE3
ENSSSCG00000013787
ENSG00000131355
Adhesion G protein-coupled receptor E3
Group enriched
Detected in some
bone marrow:
3.6
dura mater:
5.9
lung:
9.5
lymphoid tissue:
6.3
ovary:
2.7
AMBN
ENSSSCG00000008937
ENSG00000178522
Ameloblastin
Tissue enhanced
Detected in many
synovial tissue:
12.6
ANKRD44
ENSSSCG00000016074
ENSG00000065413
Ankyrin repeat domain 44
Tissue enhanced
Detected in many
lymphoid tissue:
45.2
APBB1IP
ENSSSCG00000030156
ENSG00000077420
Amyloid beta precursor protein binding family B member 1 interacting protein
Tissue enriched
Detected in many
lymphoid tissue:
75.5
ARHGAP25
ENSSSCG00000008344
ENSG00000163219
Rho GTPase activating protein 25
Tissue enhanced
Detected in many
lymphoid tissue:
57.7
ARHGAP30
ENSSSCG00000006372
ENSG00000186517
Rho GTPase activating protein 30
Tissue enhanced
Detected in many
lymphoid tissue:
49.6
stomach:
24.2
ARHGAP4
ENSSSCG00000012790
ENSG00000089820
Rho GTPase activating protein 4
Tissue enhanced
Detected in many
lymphoid tissue:
47.4
stomach:
19.6
ARHGAP45
ENSSSCG00000027565
ENSG00000180448
Rho GTPase activating protein 45
Tissue enhanced
Detected in many
lymphoid tissue:
56.8
ARHGDIB
ENSSSCG00000033337
ENSG00000111348
Rho GDP-dissociation inhibitor 2
Tissue enhanced
Detected in many
lymphoid tissue:
90.2
ARHGEF6
ENSSSCG00000030460
ENSG00000129675
Rac/Cdc42 guanine nucleotide exchange factor 6
Low tissue specificity
Detected in all
ATP2A3
ENSSSCG00000017874
ENSG00000074370
ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3
Tissue enhanced
Detected in many
salivary gland:
69.7
stomach:
96.5
upper respiratory system:
48.2
BATF
ENSSSCG00000030582
ENSG00000156127
Basic leucine zipper transcriptional factor ATF-like
Tissue enhanced
Detected in many
lymphoid tissue:
30.1
stomach:
18.0
BIN2
ENSSSCG00000000223
ENSG00000110934
Bridging integrator 2
Tissue enhanced
Detected in many
lymphoid tissue:
76.0
testis:
27.2
BIRC3
ENSSSCG00000027529
ENSG00000023445
Baculoviral IAP repeat containing 3
Low tissue specificity
Detected in all
BTK
ENSSSCG00000026742
ENSG00000010671
Tyrosine-protein kinase BTK
Tissue enhanced
Detected in many
lymphoid tissue:
33.5
upper respiratory system:
17.9
C16orf54
ENSSSCG00000029752
ENSG00000185905
Chromosome 16 open reading frame 54
Tissue enhanced
Detected in many
lung:
33.0
lymphoid tissue:
38.1
C19orf38
ENSSSCG00000013632
ENSG00000214212
Chromosome 19 open reading frame 38
Tissue enhanced
Detected in many
male glands:
32.4
C1QA
ENSSSCG00000003524
ENSG00000173372
Complement C1q subcomponent subunit A precursor
Tissue enhanced
Detected in all
lymphoid tissue:
142.8
synovial tissue:
77.9
CARD11
ENSSSCG00000034390
ENSG00000198286
Caspase recruitment domain family member 11
Tissue enhanced
Detected in many
heart:
26.3
lymphoid tissue:
33.3
stomach:
42.8
CCL3L1
ENSSSCG00000017700
ENSG00000277632
C-C motif chemokine 3-like 1 precursor
Tissue enhanced
Detected in many
dura mater:
10.8
liver:
15.6
lung:
10.2
CCR1
ENSSSCG00000011322
ENSG00000163823
C-C chemokine receptor type 1
Tissue enhanced
Detected in all
lymphoid tissue:
31.0
CCR2
ENSSSCG00000024311
ENSG00000121807
C-C chemokine receptor type 2
Tissue enhanced
Detected in many
ovary:
15.6
CD180
ENSSSCG00000016957
ENSG00000134061
CD180 antigen precursor
Tissue enhanced
Detected in many
lymphoid tissue:
28.3
CD300C
ENSSSCG00000017236
CMRF35-like molecule 6 precursor
Tissue enhanced
Detected in many
synovial tissue:
14.7
CD37
ENSSSCG00000033849
ENSG00000104894
CD37 molecule
Tissue enhanced
Detected in many
lymphoid tissue:
50.5
CD48
ENSSSCG00000006379
ENSG00000117091
CD48 antigen precursor
Tissue enhanced
Detected in many
lung:
23.1
lymphoid tissue:
39.4
upper respiratory system:
20.0
CD53
ENSSSCG00000006800
ENSG00000143119
CD53 molecule
Tissue enhanced
Detected in all
lymphoid tissue:
59.8
CD68
ENSSSCG00000017956
ENSG00000129226
Macrosialin precursor
Tissue enhanced
Detected in many
lymphoid tissue:
102.3
synovial tissue:
49.3
CFP
ENSSSCG00000012278
ENSG00000126759
Complement factor properdin
Tissue enhanced
Detected in many
lymphoid tissue:
22.0
small intestine:
36.0
stomach:
48.2
CHST11
ENSSSCG00000000837
ENSG00000171310
Carbohydrate sulfotransferase 11
Tissue enhanced
Detected in many
cartilage:
65.0
CLEC7A
ENSSSCG00000000648
ENSG00000172243
C-type lectin domain family 7 member A
Tissue enhanced
Detected in many
lung:
9.6
CMAH
ENSSSCG00000001099
Cytidine monophosphate-N-acetylneuraminic acid hydroxylase
Tissue enhanced
Detected in many
esophagus:
62.7
salivary gland:
55.2
upper respiratory system:
109.7
CSF2RB
ENSSSCG00000000136
ENSG00000100368
Colony stimulating factor 2 receptor beta common subunit
Tissue enhanced
Detected in many
lymphoid tissue:
25.3
CSF3R
ENSSSCG00000025795
ENSG00000119535
Colony stimulating factor 3 receptor
Tissue enhanced
Detected in many
dura mater:
20.7
lung:
17.6
lymphoid tissue:
21.1
CSK
ENSSSCG00000001900
ENSG00000103653
C-src tyrosine kinase
Tissue enhanced
Detected in all
lymphoid tissue:
63.2
CTSS
ENSSSCG00000006648
ENSG00000163131
Cathepsin S
Tissue enhanced
Detected in many
lymphoid tissue:
65.7
CXCL9
ENSSSCG00000032777
ENSG00000138755
C-X-C motif chemokine 9 precursor
Tissue enhanced
Detected in many
large intestine:
26.7
liver:
29.3
lymphoid tissue:
41.0
CXCR3
ENSSSCG00000012402
ENSG00000186810
C-X-C motif chemokine receptor 3
Low tissue specificity
Detected in all
CXorf21
ENSSSCG00000012201
ENSG00000120280
Chromosome X open reading frame 21
Tissue enhanced
Detected in many
lymphoid tissue:
20.4
CYTH4
ENSSSCG00000000130
ENSG00000100055
Cytohesin-4
Tissue enhanced
Detected in many
lymphoid tissue:
30.0
stomach:
28.7
CYTIP
ENSSSCG00000029753
ENSG00000115165
Cytohesin 1 interacting protein
Tissue enhanced
Detected in many
lung:
29.0
lymphoid tissue:
32.3
small intestine:
21.5
DOCK11
ENSSSCG00000012634
ENSG00000147251
Dedicator of cytokinesis 11
Tissue enhanced
Detected in many
epididymis:
35.3
lymphoid tissue:
39.2
DOCK2
ENSSSCG00000017008
ENSG00000134516
Dedicator of cytokinesis 2
Tissue enhanced
Detected in many
lymphoid tissue:
51.5
stomach:
28.8
DOCK8
ENSSSCG00000005240
ENSG00000107099
Dedicator of cytokinesis 8
Tissue enhanced
Detected in many
lymphoid tissue:
48.5
DOK2
ENSSSCG00000009612
ENSG00000147443
Docking protein 2
Low tissue specificity
Detected in many
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